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manufacturer/tradename
Chemicon®, Magna ChIRP®
technique(s)
DNA sequencing: suitable, RNA extraction: suitable (nuclear function kit), RNA purification: suitable (with magnetic beads), activity assay: suitable (protein interaction), nucleic acid detection: suitable (RNA), protein purification: suitable (protein determination)
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General description
Historically, chromatin immunoprecipitation (ChIP) has been used to interrogate association of proteins with genomic DNA sequences. Given that chromatin contains not only DNA and DNA-binding proteins, but also RNA-binding proteins and RNA, new methods have been developed to map the association of these RNA molecules to distinct regions of the genome. One such method, designated ChIRP (Chromatin Isolation by RNA Purification), allows recovery of specific segments of DNA and proteins using chromatin associated RNA as a target. This unique approach allows isolation of chromatin-associated RNAs (e.g. lncRNAs) within specific regions of genomic DNA sequences, as well as proteomic analysis of protein components of the lncRNA regulatory complexes. The Magna ChIRP RNA Interactome Kits (cat. # 17-10494 and 17-10495) facilitate the use of this method and has been proven compatible with this probe set.
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10 - Combustible liquids
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