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Merck
CN

Estimating statistical distributions using an integral identity.

The Journal of chemical physics (2012-06-07)
Cheng Zhang, Jianpeng Ma
ABSTRACT

We present an identity for an unbiased estimate of a general statistical distribution. The identity computes the distribution density from dividing a histogram sum over a local window by a correction factor from a mean-force integral, and the mean force can be evaluated as a configuration average. We show that the optimal window size is roughly the inverse of the local mean-force fluctuation. The new identity offers a more robust and precise estimate than a previous one by Adib and Jarzynski [J. Chem. Phys. 122, 014114 (2005)]. It also allows a straightforward generalization to an arbitrary ensemble and a joint distribution of multiple variables. Particularly we derive a mean-force enhanced version of the weighted histogram analysis method. The method can be used to improve distributions computed from molecular simulations. We illustrate the use in computing a potential energy distribution, a volume distribution in a constant-pressure ensemble, a radial distribution function, and a joint distribution of amino acid backbone dihedral angles.

MATERIALS
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Product Description

Sigma-Aldrich
Gly-Gly, BioPerformance Certified, suitable for cell culture, ≥99%
Sigma-Aldrich
Gly-Gly, BioXtra, ≥99.0% (NT)
Sigma-Aldrich
Gly-Gly, ≥99% (titration)
Sigma-Aldrich
Gly-Gly, BioUltra, ≥99.5% (NT)
Sigma-Aldrich
Gly-Gly, Vetec, reagent grade, 99%