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  • [NiFe]-hydrogenase maturation in vitro: analysis of the roles of the HybG and HypD accessory proteins1.

[NiFe]-hydrogenase maturation in vitro: analysis of the roles of the HybG and HypD accessory proteins1.

The Biochemical journal (2014-09-04)
Basem Soboh, Ute Lindenstrauss, Claudia Granich, Mahwish Javed, Martin Herzberg, Claudia Thomas, Sven T Stripp
ABSTRACT

[NiFe]-hydrogenases (Hyd) bind a nickel-iron-based cofactor. The Fe ion of the cofactor is bound by two cyanide ligands and a single carbon monoxide ligand. Minimally six accessory proteins (HypA-HypF) are necessary for NiFe(CN)2CO cofactor biosynthesis in Escherichia coli. It has been shown that the anaerobically purified HypC-HypD-HypE scaffold complex carries the Fe(CN)2CO moiety of this cofactor. In the present study, we have purified the HybG-HypDE complex and used it to successfully reconstitute in vitro active Hyd from E. coli. HybG is a homologue of HypC that is specifically required for the maturation of Hyd-2 and also functions in the maturation of Hyd-1 of E. coli. Maturation of active Hyd-1 and Hyd-2 could be demonstrated in extracts derived from HybG- and HypD-deficient E. coli strains by adding anaerobically purified HybG-HypDE complex. In vitro maturation was dependent on ATP, carbamoylphosphate, nickel and reducing conditions. Hydrogenase maturation was prevented when the purified HybG-HypDE complex used in the maturation assay lacked a bound Fe(CN)2CO moiety. These findings demonstrate that it is possible to isolate incompletely processed intermediates on the maturation pathway and to use these to activate apo-forms of [NiFe]-hydrogenase large subunits.

MATERIALS
Product Number
Brand
Product Description

Sigma-Aldrich
Nickel, foil, thickness 0.1 mm, 99.98% trace metals basis
Sigma-Aldrich
Nickel, foil, thickness 0.5 mm, 99.98% trace metals basis
Sigma-Aldrich
Nickel, rod, diam. 6.35 mm, ≥99.99% trace metals basis
Nickel, pellets, 50g, max. size 10mm, 99.999%
Nickel, foil, 100x100mm, thickness 1.0mm, as rolled, 99.99+%
Sigma-Aldrich
Nickel, nanopowder, <100 nm avg. part. size, ≥99% trace metals basis
Nickel, foil, light tested, 100x100mm, thickness 0.025mm, 99.9%
Nickel, wire reel, 5m, diameter 0.025mm, as drawn, 99.98%
Nickel, foil, 5m coil, thickness 0.05mm, annealed, 99%
Nickel, wire reel, 0.1m, diameter 0.75mm, as drawn, 99.99+%
Nickel, foil, 0.5m coil, thickness 0.025mm, 99.9%
Sigma-Aldrich
Nickel, wire, diam. 0.5 mm, ≥99.9% trace metals basis
Nickel, foil, 0.5m coil, thickness 0.0075mm, 99.95%
Nickel, foil, 0.2m coil, thickness 0.005mm, as rolled, 99.9%
Nickel, rod, 200mm, diameter 10.0mm, 99.99+%
Nickel, foil, light tested, 100x100mm, thickness 0.05mm, 99.9%
Nickel, foil, 0.5m coil, thickness 0.0125mm, 99.9%
Nickel, foil, not light tested, 300x300mm, thickness 0.0125mm, 99.9%
Nickel, foil, not light tested, 25x25mm, thickness 0.001mm, 99.95%
Nickel, foil, 1m coil, thickness 0.075mm, annealed, 99%
Nickel, foil, 25x25mm, thickness 0.3mm, annealed, 99%
Nickel, foil, light tested, 25x25mm, thickness 0.025mm, annealed, 99%
Nickel, foil, 100x100mm, thickness 0.25mm, as rolled, 99.99+%
Nickel, mesh, 30x30mm, nominal aperture 0.34mm, thickness 0.025mm, wire diameter 0.041mm, 70 wires/inch, open area 80%, electro-formed mesh, 99.9%
Nickel, rod, 1000mm, diameter 3.0mm, 99%
Nickel, foil, 10mm disks, thickness 0.05mm, 99.9%
Nickel, foil, light tested, 300x300mm, thickness 0.02mm, 99.9%
Nickel, tube, 500mm, outside diameter 0.65mm, inside diameter 0.384mm, wall thickness 0.133mm, as drawn, 99.5%
Nickel, foil, 25mm disks, thickness 0.038mm, 99.9%
Nickel, tube, 100mm, outside diameter 5.9mm, inside diameter 5.65mm, wall thickness 0.125mm, hard, 99.5%