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HomeSmall Molecules Analysis & QCHILIC Analysis of Twelve Nucleosides on an Ascentis® Express ZIC®-cHILIC Column

HILIC Analysis of Twelve Nucleosides on an Ascentis® Express ZIC®-cHILIC Column

Anita Piper, Senior Scientist

Introduction

Nucleosides are classified as glycosylamines and consist of a nucleobase covalently linked to a five-carbon sugar moiety (pentose). Various nucleoside analogues have been developed and are employed in clinical practice as therapeutic agents, specifically in the treatment of cancer and viral infections. Structural modifications in these analogues have been introduced to enhance their efficacy and specificity toward pathways involved in cellular proliferation and viral replication.1,2

This application focusses on the qualitative analysis of a standard mixture containing twelve nucleosides (Figure 1) by HPLC with UV detection. The separation was performed on a HILIC column with a zwitterionic phase (phosphorylcholine) on superficially porous particles (SPP), the Ascentis® Express ZIC®-cHILIC. 

Chemical structure of ribothymidine showing a methylated thymine base attached to ribose.
Chemical structure of uridine showing the uracil base attached to a ribose sugar.
Chemical structure of 2-thiocytidine with a sulfur substitution at position 2 of the cytidine base linked to
Chemical structure of 2'-O-methylcytidine showing a methyl group on the ribose 2' oxygen and a cytidine base.
Chemical structure of pseudouridine showing a C–C glycosidic bond linking uracil to ribose.
Chemical structure of inosine with a hypoxanthine base attached to a ribose sugar.
Chemical structure of 5-methylcytidine depicting a methyl substitution at position 5 on the cytidine ring with ribose sugar.
Chemical structure of cytidine showing the cytosine nucleobase attached to a ribose sugar.
Chemical structure of guanosine showing the guanine base linked to a ribose sugar.
Chemical structure of 3-methylcytidine showing a methyl group at position 3 on the cytidine nucleobase with ribose attached.
Chemical structure of 1-methyladenosine showing a methylated adenine base linked to a ribose sugar.
Chemical structure of 7-methylguanosine showing a methyl group at position 7 on the guanine base linked to ribose.

Figure 1. Compounds in Nucleoside Test Mix (47310-U).

Experimental

The Nucleoside Test Mix (47310-U; matrix: 1% sodium formate in water) was diluted at a ratio of 1:10 with acetonitrile, to prepare a standard solution (Table 1) with a matrix composition similar to the initial mobile phase condition of the used HILIC method, which consisted of buffer and acetonitrile in a 3:97 ratio (Table 2). The qualitative analysis of the twelve nucleosides at varying concentrations in the standard mixture was carried out using UV detection on an Ascentis® Express 160 Å ZIC®-cHILIC 2.7 µm SPP column (150 x 2.1 mm I.D.).

Results

The qualitative analysis of the standard mixture containing twelve nucleosides at varying concentrations was carried out by U/HPLC-UV on an Ascentis®Express 160 Å ZIC®-cHILIC, 2.7 µm SPP column (150 x 2.1 mm I.D.). The separation (Figure 2) showed good chromatographic performance, providing baseline separation with sharp and symmetrical peaks (Table 3).

HILIC HPLC chromatogram showing twelve nucleosides labeled by peak number with retention times and UV intensity plotted over a 0 to 25 minute run.

Figure 2.U/HPLC-UV chromatogram obtained for the standard mixture containing twelve nucleosides using an Ascentis® Express 160 Å ZIC®-cHILIC column (2.7 µm, 150 x 2.1 mm).

Conclusion

The developed simple HPLC-UV HILIC method enabled the determination of twelve nucleosides with baseline separation and good peak symmetry on an Ascentis® Express 160 Å ZIC®-cHILIC 2.7 µm SPP column (150 x 2.1 mm). The zwitterionic phosphorylcholine phase on the superficially porous particles (SPP) provided excellent retention and efficiency, enabling optimized HILIC separations.

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References

1.
Van Rompay AR, Johansson M, Karlsson A. 2003. Substrate specificity and phosphorylation of antiviral and anticancer nucleoside analogues by human deoxyribonucleoside kinases and ribonucleoside kinases. Pharmacology & Therapeutics. 100(2):119-139. https://doi.org/10.1016/j.pharmthera.2003.07.001
2.
LiverTox: Clinical and Research Information on Drug-Induced Liver Injury. Bethesda (MD): National Institute of Diabetes and Digestive and Kidney Diseases; 2012-. Nucleoside Analogues. [Updated 2020 May 1]. Available from: https://www.ncbi.nlm.nih.gov/books/NBK548938/
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