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Merck
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  • SDE2 is an essential gene required for ribosome biogenesis and the regulation of alternative splicing.

SDE2 is an essential gene required for ribosome biogenesis and the regulation of alternative splicing.

Nucleic acids research (2021-08-09)
Jess Floro, Anqi Dai, Abigail Metzger, Alexandra Mora-Martin, Neil J Ganem, Daniel Cifuentes, Ching-Shyi Wu, Jasbir Dalal, Shawn M Lyons, Adam Labadorf, Rachel L Flynn
摘要

RNA provides the framework for the assembly of some of the most intricate macromolecular complexes within the cell, including the spliceosome and the mature ribosome. The assembly of these complexes relies on the coordinated association of RNA with hundreds of trans-acting protein factors. While some of these trans-acting factors are RNA-binding proteins (RBPs), others are adaptor proteins, and others still, function as both. Defects in the assembly of these complexes results in a number of human pathologies including neurodegeneration and cancer. Here, we demonstrate that Silencing Defective 2 (SDE2) is both an RNA binding protein and also a trans-acting adaptor protein that functions to regulate RNA splicing and ribosome biogenesis. SDE2 depletion leads to widespread changes in alternative splicing, defects in ribosome biogenesis and ultimately complete loss of cell viability. Our data highlight SDE2 as a previously uncharacterized essential gene required for the assembly and maturation of the complexes that carry out two of the most fundamental processes in mammalian cells.

材料
Product Number
品牌
产品描述

Sigma-Aldrich
Protease Inhibitor Cocktail, for use with mammalian cell and tissue extracts, DMSO solution
Sigma-Aldrich
DAPI, for nucleic acid staining
Roche
抗地高辛-AP,Fab片段, from sheep
Sigma-Aldrich
抗嘌呤霉素抗体,克隆 12D10, clone 12D10, from mouse
Roche
DIG寡核苷酸3′-末端标记试剂盒,第2代, sufficient for 25 labeling reactions (100 pmol of oligonucleotides per assay; 1 ug of a 30-mer oligonucleotide), storage condition avoid repeated freeze/thaw cycles